J5_5HCR_008
3D structure
- PDB id
- 5HCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CUGG*CUUG*CUGAACC*GGGUAAUAG*CGAG
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5HCR_008 not in the Motif Atlas
- Homologous match to J5_6CZR_007
- Geometric discrepancy: 0.109
- The information below is about J5_6CZR_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5HCR|1|1a|C|37
5HCR|1|1a|U|38
5HCR|1|1a|G|39
5HCR|1|1a|G|40
*
5HCR|1|1a|C|399
5HCR|1|1a|U|400
5HCR|1|1a|U|401
5HCR|1|1a|G|402
*
5HCR|1|1a|C|432
5HCR|1|1a|U|433
5HCR|1|1a|G|434
5HCR|1|1a|A|435
5HCR|1|1a|A|436
5HCR|1|1a|C|437
5HCR|1|1a|C|438
*
5HCR|1|1a|G|476
5HCR|1|1a|G|477
5HCR|1|1a|G|478
5HCR|1|1a|U|479
5HCR|1|1a|A|480
5HCR|1|1a|A|481
5HCR|1|1a|U|482
5HCR|1|1a|A|483
5HCR|1|1a|G|484
*
5HCR|1|1a|C|529
5HCR|1|1a|G|530
5HCR|1|1a|A|531
5HCR|1|1a|G|532
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1d
- 30S ribosomal protein S4
- Chain 1l
- 30S ribosomal protein S12
Coloring options: