J5_5HCR_014

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

5HCR|1|2A|A|678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HCR|1|2A|C|623
5HCR|1|2A|G|624
5HCR|1|2A|A|625
5HCR|1|2A|G|626
*
5HCR|1|2A|C|648
5HCR|1|2A|G|649
5HCR|1|2A|U|650
5HCR|1|2A|A|651
5HCR|1|2A|G|652
*
5HCR|1|2A|C|659
5HCR|1|2A|G|660
5HCR|1|2A|A|661
5HCR|1|2A|G|662
*
5HCR|1|2A|C|674
5HCR|1|2A|G|675
5HCR|1|2A|C|676
5HCR|1|2A|A|677
5HCR|1|2A|A|678
5HCR|1|2A|G|679
*
5HCR|1|2A|C|698
5HCR|1|2A|A|699
5HCR|1|2A|A|700
5HCR|1|2A|A|701
5HCR|1|2A|G|702

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15