J5_5HD1_019
3D structure
- PDB id
- 5HD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 5HD1|1|2a|A|103, 5HD1|1|2a|C|348
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5HD1_019 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.0834
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5HD1|1|2a|C|59
5HD1|1|2a|A|60
5HD1|1|2a|A|61
5HD1|1|2a|G|62
*
5HD1|1|2a|C|100
5HD1|1|2a|G|101
5HD1|1|2a|G|102
5HD1|1|2a|A|103
5HD1|1|2a|C|104
5HD1|1|2a|G|105
5HD1|1|2a|G|106
5HD1|1|2a|G|107
*
5HD1|1|2a|C|310
5HD1|1|2a|A|311
5HD1|1|2a|G|312
*
5HD1|1|2a|C|333
5HD1|1|2a|A|334
5HD1|1|2a|C|335
*
5HD1|1|2a|G|346
5HD1|1|2a|G|347
5HD1|1|2a|C|348
5HD1|1|2a|A|349
5HD1|1|2a|G|350
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2O
- 50S ribosomal protein L14
- Chain 2T
- 50S ribosomal protein L19
- Chain 2p
- 30S ribosomal protein S16
- Chain 2t
- 30S ribosomal protein S20
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