J5_5HL7_005

3D structure

PDB id

5HL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GCAAAAUGA*UG*CC*GUGAAUAGG*CAC

Length

25 nucleotides

Bulged bases

5HL7|1|X|G|1785, 5HL7|1|X|G|1790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5HL7_005 not in the Motif Atlas

Homologous match to J5_4WF9_005

Geometric discrepancy: 0.0463

The information below is about J5_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

5HL7|1|X|G|1718
5HL7|1|X|C|1719
5HL7|1|X|A|1720
5HL7|1|X|A|1721
5HL7|1|X|A|1722
5HL7|1|X|A|1723
5HL7|1|X|U|1724
5HL7|1|X|G|1725
5HL7|1|X|A|1726
*
5HL7|1|X|U|1750
5HL7|1|X|G|1751
*
5HL7|1|X|C|1778
5HL7|1|X|C|1779
*
5HL7|1|X|G|1783
5HL7|1|X|U|1784
5HL7|1|X|G|1785
5HL7|1|X|A|1786
5HL7|1|X|A|1787
5HL7|1|X|U|1788
5HL7|1|X|A|1789
5HL7|1|X|G|1790
5HL7|1|X|G|1791
*
5HL7|1|X|C|2015
5HL7|1|X|A|2016
5HL7|1|X|C|2017

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain H

50S ribosomal protein L14

Chain M

50S ribosomal protein L19