J5_5IB8_001

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5IB8_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0796

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5IB8|1|13|C|36
5IB8|1|13|U|37
5IB8|1|13|G|38
5IB8|1|13|G|39
*
5IB8|1|13|C|403
5IB8|1|13|U|404
5IB8|1|13|U|405
5IB8|1|13|G|406
*
5IB8|1|13|C|436
5IB8|1|13|U|437
5IB8|1|13|G|438
5IB8|1|13|A|439
5IB8|1|13|A|440
5IB8|1|13|C|442
*
5IB8|1|13|G|492
5IB8|1|13|G|493
5IB8|1|13|U|494
5IB8|1|13|A|495
5IB8|1|13|A|496
5IB8|1|13|U|497
5IB8|1|13|A|498
5IB8|1|13|G|500
*
5IB8|1|13|C|545
5IB8|1|13|G|546
5IB8|1|13|A|547
5IB8|1|13|G|548

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 3E

30S ribosomal protein S4

Chain 3I

30S ribosomal protein S12

Chain 69

50S ribosomal protein L9