J5_5IB8_006

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CGACUC*GGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

5IB8|1|14|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5IB8_006 not in the Motif Atlas

Homologous match to J5_9DFE_004

Geometric discrepancy: 0.0624

The information below is about J5_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

5IB8|1|14|C|584
5IB8|1|14|G|585
5IB8|1|14|A|586
5IB8|1|14|C|587
5IB8|1|14|U|588
5IB8|1|14|C|589
*
5IB8|1|14|G|668
5IB8|1|14|G|669
5IB8|1|14|A|670
5IB8|1|14|C|671
*
5IB8|1|14|G|809
5IB8|1|14|U|810
5IB8|1|14|U|811
5IB8|1|14|C|812
*
5IB8|1|14|G|1195
5IB8|1|14|C|1196
*
5IB8|1|14|G|1250
5IB8|1|14|C|1251
5IB8|1|14|G|1252
5IB8|1|14|A|1253
5IB8|1|14|A|1254
5IB8|1|14|U|1255
5IB8|1|14|G|1256

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 35

50S ribosomal protein L15

Chain 39

50S ribosomal protein L4

Chain 85

50S ribosomal protein L20

Chain 95

50S ribosomal protein L21

Chain M5

50S ribosomal protein L35