J5_5IB8_012

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

5IB8|1|1H|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5IB8_012 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0539

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5IB8|1|1H|C|47
5IB8|1|1H|G|48
5IB8|1|1H|A|49
5IB8|1|1H|U|50
5IB8|1|1H|G|51
5IB8|1|1H|A|52
5IB8|1|1H|A|53
5IB8|1|1H|G|54
*
5IB8|1|1H|C|116
5IB8|1|1H|G|117
5IB8|1|1H|A|118
5IB8|1|1H|A|119
5IB8|1|1H|U|120
5IB8|1|1H|G|121
*
5IB8|1|1H|C|130
5IB8|1|1H|G|131
*
5IB8|1|1H|C|148
5IB8|1|1H|A|149
5IB8|1|1H|C|150
*
5IB8|1|1H|G|176
5IB8|1|1H|G|177
5IB8|1|1H|G|178

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain F8

50S ribosomal protein L23

Chain P8

50S ribosomal protein L34