J5_5IBB_001

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5IBB_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.078

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5IBB|1|13|C|36
5IBB|1|13|U|37
5IBB|1|13|G|38
5IBB|1|13|G|39
*
5IBB|1|13|C|403
5IBB|1|13|U|404
5IBB|1|13|U|405
5IBB|1|13|G|406
*
5IBB|1|13|C|436
5IBB|1|13|U|437
5IBB|1|13|G|438
5IBB|1|13|A|439
5IBB|1|13|A|440
5IBB|1|13|C|442
*
5IBB|1|13|G|492
5IBB|1|13|G|493
5IBB|1|13|U|494
5IBB|1|13|A|495
5IBB|1|13|A|496
5IBB|1|13|U|497
5IBB|1|13|A|498
5IBB|1|13|G|500
*
5IBB|1|13|C|545
5IBB|1|13|G|546
5IBB|1|13|A|547
5IBB|1|13|G|548

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 3E

30S ribosomal protein S4

Chain 3I

30S ribosomal protein S12

Chain 69

50S ribosomal protein L9