3D structure

PDB id
5IMR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosome bound to cofactor at 5.7 angstrom resolution
Experimental method
ELECTRON MICROSCOPY
Resolution
5.7 Å

Loop

Sequence
ACAUGCAAG*CGGACGGGU*ACAG*CAC*GGCAGCAGU
Length
34 nucleotides
Bulged bases
5IMR|1|A|G|108, 5IMR|1|A|A|109, 5IMR|1|A|G|111
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5IMR|1|A|A|53
5IMR|1|A|C|54
5IMR|1|A|A|55
5IMR|1|A|U|56
5IMR|1|A|G|57
5IMR|1|A|C|58
5IMR|1|A|A|59
5IMR|1|A|A|60
5IMR|1|A|G|61
*
5IMR|1|A|C|106
5IMR|1|A|G|107
5IMR|1|A|G|108
5IMR|1|A|A|109
5IMR|1|A|C|110
5IMR|1|A|G|111
5IMR|1|A|G|112
5IMR|1|A|G|113
5IMR|1|A|U|114
*
5IMR|1|A|A|313
5IMR|1|A|C|314
5IMR|1|A|A|315
5IMR|1|A|G|316
*
5IMR|1|A|C|337
5IMR|1|A|A|338
5IMR|1|A|C|339
*
5IMR|1|A|G|350
5IMR|1|A|G|351
5IMR|1|A|C|352
5IMR|1|A|A|353
5IMR|1|A|G|354
5IMR|1|A|C|355
5IMR|1|A|A|356
5IMR|1|A|G|357
5IMR|1|A|U|358

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain C
Elongation factor 4
Chain T
30S ribosomal protein S16
Chain X
30S ribosomal protein S20
Chain g
50S ribosomal protein L14

Coloring options:

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