J5_5IMR_003

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GC*GGAACC*GAGGAGAGGAAAGAGAAAUCGACU*ACCAGC*GCUAAGUAC

Length

47 nucleotides

Bulged bases

5IMR|1|D|A|223, 5IMR|1|D|A|229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMR|1|D|G|45
5IMR|1|D|C|46
*
5IMR|1|D|G|179
5IMR|1|D|G|180
5IMR|1|D|A|181
5IMR|1|D|A|182
5IMR|1|D|C|183
5IMR|1|D|C|184
*
5IMR|1|D|G|212
5IMR|1|D|A|213
5IMR|1|D|G|214
5IMR|1|D|G|215
5IMR|1|D|A|216
5IMR|1|D|G|217
5IMR|1|D|A|218
5IMR|1|D|G|219
5IMR|1|D|G|220
5IMR|1|D|A|221
5IMR|1|D|A|222
5IMR|1|D|A|223
5IMR|1|D|G|224
5IMR|1|D|A|225
5IMR|1|D|G|226
5IMR|1|D|A|227
5IMR|1|D|A|228
5IMR|1|D|A|229
5IMR|1|D|U|230
5IMR|1|D|C|231
5IMR|1|D|G|232
5IMR|1|D|A|233
5IMR|1|D|C|234
5IMR|1|D|U|235
*
5IMR|1|D|A|262
5IMR|1|D|C|263
5IMR|1|D|C|264
5IMR|1|D|A|265
5IMR|1|D|G|266
5IMR|1|D|C|267
*
5IMR|1|D|G|425
5IMR|1|D|C|426
5IMR|1|D|U|427
5IMR|1|D|A|428
5IMR|1|D|A|429
5IMR|1|D|G|430
5IMR|1|D|U|431
5IMR|1|D|A|432
5IMR|1|D|C|433

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain h

50S ribosomal protein L15

Chain v

50S ribosomal protein L31

Chain y

50S ribosomal protein L34