Loop J5_5IMR

3D structure

PDB id: 5IMR (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of ribosome bound to cofactor at 5.7 angstrom resolution
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.7 Å

Loop

Sequence: CUAAACC*GGGGUCGUGGGG*UACCCGAGUAC*GGAAUCUGG*CUAAG
Length: 44 nucleotides
Bulged bases: 5IMR|1|D|A|270, 5IMR|1|D|A|270|||A, 5IMR|1|D|A|270|||B, 5IMR|1|D|U|270|||Z, 5IMR|1|D|C|271|||A, 5IMR|1|D|G|271|||B, 5IMR|1|D|A|371, 5IMR|1|D|G|372, 5IMR|1|D|U|373, 5IMR|1|D|G|400, 5IMR|1|D|U|403, 5IMR|1|D|U|405
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5IMR|1|D|C|268
5IMR|1|D|U|269
5IMR|1|D|A|270
5IMR|1|D|A|270|||A
5IMR|1|D|A|270|||B
5IMR|1|D|C|270|||C
5IMR|1|D|C|270|||D
*
5IMR|1|D|G|270|||V
5IMR|1|D|G|270|||W
5IMR|1|D|G|270|||X
5IMR|1|D|G|270|||Y
5IMR|1|D|U|270|||Z
5IMR|1|D|C|271|||A
5IMR|1|D|G|271|||B
5IMR|1|D|U|271|||C
5IMR|1|D|G|271
5IMR|1|D|G|272
5IMR|1|D|G|273
5IMR|1|D|G|273|||A
*
5IMR|1|D|U|363|||E
5IMR|1|D|A|363|||F
5IMR|1|D|C|364
5IMR|1|D|C|365
5IMR|1|D|C|366
5IMR|1|D|G|370
5IMR|1|D|A|371
5IMR|1|D|G|372
5IMR|1|D|U|373
5IMR|1|D|A|374
5IMR|1|D|C|375
*
5IMR|1|D|G|399
5IMR|1|D|G|400
5IMR|1|D|A|401
5IMR|1|D|A|402
5IMR|1|D|U|403
5IMR|1|D|C|404
5IMR|1|D|U|405
5IMR|1|D|G|406
5IMR|1|D|G|407
*
5IMR|1|D|C|420
5IMR|1|D|U|421
5IMR|1|D|A|422
5IMR|1|D|A|423
5IMR|1|D|G|424

Current chains

Chain D: 23S ribosomal RNA

Nearby chains

Chain v: 50S ribosomal protein L31

J5_5IMR_004