Loop J5_5IMR

3D structure

PDB id: 5IMR (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of ribosome bound to cofactor at 5.7 angstrom resolution
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.7 Å

Loop

Sequence: CAAGGAACUCUGCAAGUUGGC*GUG*CC*GUGAACAGG*CGCUGUCUCG
Length: 45 nucleotides
Bulged bases: 5IMR|1|D|A|1664, 5IMR|1|D|A|1669, 5IMR|1|D|G|1674, 5IMR|1|D|G|1758, 5IMR|1|D|C|1761, 5IMR|1|D|G|1763, 5IMR|1|D|C|1996
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5IMR|1|D|C|1663
5IMR|1|D|A|1664
5IMR|1|D|A|1665
5IMR|1|D|G|1666
5IMR|1|D|G|1667
5IMR|1|D|A|1668
5IMR|1|D|A|1669
5IMR|1|D|C|1670
5IMR|1|D|U|1671
5IMR|1|D|C|1672
5IMR|1|D|U|1673
5IMR|1|D|G|1674
5IMR|1|D|C|1675
5IMR|1|D|A|1676
5IMR|1|D|A|1677
5IMR|1|D|G|1678
5IMR|1|D|U|1679
5IMR|1|D|U|1680
5IMR|1|D|G|1681
5IMR|1|D|G|1682
5IMR|1|D|C|1683
*
5IMR|1|D|G|1705
5IMR|1|D|U|1706
5IMR|1|D|G|1707
*
5IMR|1|D|C|1751
5IMR|1|D|C|1752
*
5IMR|1|D|G|1756
5IMR|1|D|U|1757
5IMR|1|D|G|1758
5IMR|1|D|A|1759
5IMR|1|D|A|1760
5IMR|1|D|C|1761
5IMR|1|D|A|1762
5IMR|1|D|G|1763
5IMR|1|D|G|1764
*
5IMR|1|D|C|1988
5IMR|1|D|G|1989
5IMR|1|D|C|1990
5IMR|1|D|U|1991
5IMR|1|D|G|1992
5IMR|1|D|U|1993
5IMR|1|D|C|1994
5IMR|1|D|U|1995
5IMR|1|D|C|1996
5IMR|1|D|G|1997

Current chains

Chain D: 23S ribosomal RNA

Nearby chains

Chain A: Small subunit ribosomal RNA; SSU rRNA
Chain b: 50S ribosomal protein L3
Chain g: 50S ribosomal protein L14
Chain l: 50S ribosomal protein L19

J5_5IMR_006