J5_5IMR_007
3D structure
- PDB id
- 5IMR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 5.7 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- GACGAAAAGACC*GGAUAACAGG*CACCUCGAUGUC*GGUUCAG*CGGUCUCUAUC
- Length
- 52 nucleotides
- Bulged bases
- 5IMR|1|D|C|2055, 5IMR|1|D|G|2061, 5IMR|1|D|A|2062, 5IMR|1|D|A|2448, 5IMR|1|D|U|2449, 5IMR|1|D|A|2450, 5IMR|1|D|G|2505, 5IMR|1|D|U|2506, 5IMR|1|D|U|2585, 5IMR|1|D|C|2586, 5IMR|1|D|A|2587, 5IMR|1|D|G|2608, 5IMR|1|D|U|2609, 5IMR|1|D|C|2610, 5IMR|1|D|U|2613, 5IMR|1|D|A|2614
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5IMR|1|D|G|2053
5IMR|1|D|A|2054
5IMR|1|D|C|2055
5IMR|1|D|G|2056
5IMR|1|D|A|2057
5IMR|1|D|A|2058
5IMR|1|D|A|2059
5IMR|1|D|A|2060
5IMR|1|D|G|2061
5IMR|1|D|A|2062
5IMR|1|D|C|2063
5IMR|1|D|C|2064
*
5IMR|1|D|G|2446
5IMR|1|D|G|2447
5IMR|1|D|A|2448
5IMR|1|D|U|2449
5IMR|1|D|A|2450
5IMR|1|D|A|2451
5IMR|1|D|C|2452
5IMR|1|D|A|2453
5IMR|1|D|G|2454
5IMR|1|D|G|2455
*
5IMR|1|D|C|2496
5IMR|1|D|A|2497
5IMR|1|D|C|2498
5IMR|1|D|C|2499
5IMR|1|D|U|2500
5IMR|1|D|C|2501
5IMR|1|D|G|2502
5IMR|1|D|A|2503
5IMR|1|D|U|2504
5IMR|1|D|G|2505
5IMR|1|D|U|2506
5IMR|1|D|C|2507
*
5IMR|1|D|G|2582
5IMR|1|D|G|2583
5IMR|1|D|U|2584
5IMR|1|D|U|2585
5IMR|1|D|C|2586
5IMR|1|D|A|2587
5IMR|1|D|G|2588
*
5IMR|1|D|C|2606
5IMR|1|D|G|2607
5IMR|1|D|G|2608
5IMR|1|D|U|2609
5IMR|1|D|C|2610
5IMR|1|D|U|2611
5IMR|1|D|C|2612
5IMR|1|D|U|2613
5IMR|1|D|A|2614
5IMR|1|D|U|2615
5IMR|1|D|C|2616
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain 4
- Transfer RNA; tRNA
- Chain C
- Elongation factor 4
- Chain a
- 50S ribosomal protein L2
- Chain b
- 50S ribosomal protein L3
- Chain c
- 50S ribosomal protein L4
- Chain h
- 50S ribosomal protein L15
- Chain i
- 50S ribosomal protein L16
- Chain o
- 50S ribosomal protein L22
- Chain w
- 50S ribosomal protein L32
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