J5_5IMR_012
3D structure
- PDB id
- 5IMR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 5.7 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 5IMR|1|D|U|811, 5IMR|1|D|C|1251, 5IMR|1|D|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5IMR_012 not in the Motif Atlas
- Homologous match to J5_7A0S_004
- Geometric discrepancy: 0.3117
- The information below is about J5_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5IMR|1|D|C|584
5IMR|1|D|G|585
5IMR|1|D|A|586
5IMR|1|D|C|587
5IMR|1|D|U|588
5IMR|1|D|C|589
*
5IMR|1|D|G|668
5IMR|1|D|G|669
5IMR|1|D|A|670
5IMR|1|D|C|671
*
5IMR|1|D|G|809
5IMR|1|D|U|810
5IMR|1|D|U|811
5IMR|1|D|C|812
*
5IMR|1|D|G|1195
5IMR|1|D|C|1196
*
5IMR|1|D|G|1250
5IMR|1|D|C|1251
5IMR|1|D|G|1252
5IMR|1|D|A|1253
5IMR|1|D|A|1254
5IMR|1|D|U|1255
5IMR|1|D|G|1256
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain c
- 50S ribosomal protein L4
- Chain h
- 50S ribosomal protein L15
- Chain m
- 50S ribosomal protein L20
- Chain n
- 50S ribosomal protein L21
- Chain z
- 50S ribosomal protein L35
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