J5_5IMR_015
3D structure
- PDB id
- 5IMR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 5.7 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- UUUA*UUUGA*UCG*CG*CGGAUAAAA
- Length
- 23 nucleotides
- Bulged bases
- 5IMR|1|D|U|2075, 5IMR|1|D|U|2076, 5IMR|1|D|A|2430, 5IMR|1|D|U|2431, 5IMR|1|D|A|2434
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5IMR|1|D|U|2074
5IMR|1|D|U|2075
5IMR|1|D|U|2076
5IMR|1|D|A|2077
*
5IMR|1|D|U|2243
5IMR|1|D|U|2244
5IMR|1|D|U|2245
5IMR|1|D|G|2246
5IMR|1|D|A|2247
*
5IMR|1|D|U|2257
5IMR|1|D|C|2258
5IMR|1|D|G|2259
*
5IMR|1|D|C|2281
5IMR|1|D|G|2282
*
5IMR|1|D|C|2427
5IMR|1|D|G|2428
5IMR|1|D|G|2429
5IMR|1|D|A|2430
5IMR|1|D|U|2431
5IMR|1|D|A|2432
5IMR|1|D|A|2433
5IMR|1|D|A|2434
5IMR|1|D|A|2435
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain 4
- Transfer RNA; tRNA
- Chain 5
- Transfer RNA; tRNA
- Chain a
- 50S ribosomal protein L2
- Chain h
- 50S ribosomal protein L15
- Chain s
- 50S ribosomal protein L27
- Chain v
- 50S ribosomal protein L31
- Chain x
- 50S ribosomal protein L33
- Chain z
- 50S ribosomal protein L35
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