J5_5IQR_001

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

5IQR|1|1|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5IQR_001 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.1425

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5IQR|1|1|C|47
5IQR|1|1|G|48
5IQR|1|1|A|49
5IQR|1|1|U|50
5IQR|1|1|G|51
5IQR|1|1|A|52
5IQR|1|1|A|53
5IQR|1|1|G|54
*
5IQR|1|1|C|116
5IQR|1|1|G|117
5IQR|1|1|A|118
5IQR|1|1|A|119
5IQR|1|1|U|120
5IQR|1|1|G|121
*
5IQR|1|1|C|130
5IQR|1|1|A|131
*
5IQR|1|1|U|148
5IQR|1|1|A|149
5IQR|1|1|U|150
*
5IQR|1|1|A|176
5IQR|1|1|G|177
5IQR|1|1|G|178

Current chains

Chain 1

LSU rRNA

Nearby chains

Chain d

50S ribosomal protein L34