J5_5IT8_002

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5IT8_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0254

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

5IT8|1|AA|C|36
5IT8|1|AA|U|37
5IT8|1|AA|G|38
5IT8|1|AA|G|39
*
5IT8|1|AA|C|403
5IT8|1|AA|G|404
5IT8|1|AA|U|405
5IT8|1|AA|G|406
*
5IT8|1|AA|C|436
5IT8|1|AA|U|437
5IT8|1|AA|U|438
5IT8|1|AA|U|439
5IT8|1|AA|C|440
5IT8|1|AA|A|441
5IT8|1|AA|G|442
*
5IT8|1|AA|C|492
5IT8|1|AA|A|493
5IT8|1|AA|G|494
5IT8|1|AA|A|495
5IT8|1|AA|A|496
5IT8|1|AA|G|497
5IT8|1|AA|A|498
5IT8|1|AA|A|499
5IT8|1|AA|G|500
*
5IT8|1|AA|C|545
5IT8|1|AA|A|546
5IT8|1|AA|A|547
5IT8|1|AA|G|548

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12