J5_5IT8_003
3D structure
- PDB id
- 5IT8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution structure of the Escherichia coli ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 5IT8|1|AA|A|109, 5IT8|1|AA|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5IT8_003 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.0306
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5IT8|1|AA|C|58
5IT8|1|AA|A|59
5IT8|1|AA|A|60
5IT8|1|AA|G|61
*
5IT8|1|AA|C|106
5IT8|1|AA|G|107
5IT8|1|AA|G|108
5IT8|1|AA|A|109
5IT8|1|AA|C|110
5IT8|1|AA|G|111
5IT8|1|AA|G|112
5IT8|1|AA|G|113
*
5IT8|1|AA|C|314
5IT8|1|AA|A|315
5IT8|1|AA|C|316
*
5IT8|1|AA|G|337
5IT8|1|AA|A|338
5IT8|1|AA|C|339
*
5IT8|1|AA|G|350
5IT8|1|AA|G|351
5IT8|1|AA|C|352
5IT8|1|AA|A|353
5IT8|1|AA|G|354
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AP
- 30S ribosomal protein S16
- Chain AT
- 30S ribosomal protein S20
- Chain DL
- 50S ribosomal protein L14
- Chain DQ
- 50S ribosomal protein L19
Coloring options: