J5_5IT8_011

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCG(2MA)(PSU)GU*GUUUAG*CGGUCC

Length

35 nucleotides

Bulged bases

5IT8|1|CA|A|2062, 5IT8|1|CA|A|2448, 5IT8|1|CA|U|2449, 5IT8|1|CA|U|2585, 5IT8|1|CA|U|2609

QA status

Modified nucleotides: 2MA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IT8|1|CA|G|2057
5IT8|1|CA|A|2058
5IT8|1|CA|A|2059
5IT8|1|CA|A|2060
5IT8|1|CA|G|2061
5IT8|1|CA|A|2062
5IT8|1|CA|C|2063
5IT8|1|CA|C|2064
*
5IT8|1|CA|G|2446
5IT8|1|CA|G|2447
5IT8|1|CA|A|2448
5IT8|1|CA|U|2449
5IT8|1|CA|A|2450
5IT8|1|CA|A|2451
5IT8|1|CA|C|2452
5IT8|1|CA|A|2453
*
5IT8|1|CA|U|2500
5IT8|1|CA|C|2501
5IT8|1|CA|G|2502
5IT8|1|CA|2MA|2503
5IT8|1|CA|PSU|2504
5IT8|1|CA|G|2505
5IT8|1|CA|U|2506
*
5IT8|1|CA|G|2583
5IT8|1|CA|U|2584
5IT8|1|CA|U|2585
5IT8|1|CA|U|2586
5IT8|1|CA|A|2587
5IT8|1|CA|G|2588
*
5IT8|1|CA|C|2606
5IT8|1|CA|G|2607
5IT8|1|CA|G|2608
5IT8|1|CA|U|2609
5IT8|1|CA|C|2610
5IT8|1|CA|C|2611

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C1

50S ribosomal protein L32

Chain CC

50S ribosomal protein L2

Chain CD

50S ribosomal protein L3

Chain CE

50S ribosomal protein L4

Chain CM

50S ribosomal protein L15

Chain CT

50S ribosomal protein L22