J5_5IT8_013

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

5IT8|1|DA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5IT8_013 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0399

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5IT8|1|DA|C|47
5IT8|1|DA|G|48
5IT8|1|DA|A|49
5IT8|1|DA|U|50
5IT8|1|DA|G|51
5IT8|1|DA|A|52
5IT8|1|DA|A|53
5IT8|1|DA|G|54
*
5IT8|1|DA|C|116
5IT8|1|DA|G|117
5IT8|1|DA|A|118
5IT8|1|DA|A|119
5IT8|1|DA|U|120
5IT8|1|DA|G|121
*
5IT8|1|DA|C|130
5IT8|1|DA|A|131
*
5IT8|1|DA|U|148
5IT8|1|DA|A|149
5IT8|1|DA|U|150
*
5IT8|1|DA|A|176
5IT8|1|DA|G|177
5IT8|1|DA|G|178

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D3

50S ribosomal protein L34