J5_5IT9_002
3D structure
- PDB id
- 5IT9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 5IT9|1|2|A|93, 5IT9|1|2|C|423
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5IT9_002 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.0741
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5IT9|1|2|C|54
5IT9|1|2|A|55
5IT9|1|2|U|56
5IT9|1|2|G|57
*
5IT9|1|2|C|90
5IT9|1|2|G|91
5IT9|1|2|A|92
5IT9|1|2|A|93
5IT9|1|2|U|94
5IT9|1|2|G|95
5IT9|1|2|G|96
5IT9|1|2|C|97
*
5IT9|1|2|G|385
5IT9|1|2|A|386
5IT9|1|2|G|387
*
5IT9|1|2|C|408
5IT9|1|2|A|409
5IT9|1|2|C|410
*
5IT9|1|2|G|421
5IT9|1|2|G|422
5IT9|1|2|C|423
5IT9|1|2|A|424
5IT9|1|2|G|425
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain E
- Ribosomal protein eS4
- Chain G
- Ribosomal protein eS6
- Chain I
- Ribosomal protein eS8
- Chain J
- Ribosomal protein uS4
- Chain Y
- Ribosomal protein eS24
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