J5_5IWA_001

3D structure

PDB id

5IWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with the GE81112 peptide antibiotic

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5IWA_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0651

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5IWA|1|A|C|36
5IWA|1|A|U|37
5IWA|1|A|G|38
5IWA|1|A|G|39
*
5IWA|1|A|C|403
5IWA|1|A|U|404
5IWA|1|A|U|405
5IWA|1|A|G|406
*
5IWA|1|A|C|436
5IWA|1|A|U|437
5IWA|1|A|G|438
5IWA|1|A|A|439
5IWA|1|A|A|440
5IWA|1|A|C|442
*
5IWA|1|A|G|492
5IWA|1|A|G|494
5IWA|1|A|U|495
5IWA|1|A|A|496
5IWA|1|A|A|497
5IWA|1|A|U|498
5IWA|1|A|A|499
5IWA|1|A|G|500
*
5IWA|1|A|C|545
5IWA|1|A|G|546
5IWA|1|A|A|547
5IWA|1|A|G|548

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain L

30S ribosomal protein S12