J5_5J01_001

3D structure

PDB id

5J01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+ and MG2+.

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

UAUAG*CGAA*UUAG*CAAAC*GGAAA

Length

23 nucleotides

Bulged bases

5J01|1|A|A|245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J01|1|A|U|24
5J01|1|A|A|25
5J01|1|A|U|26
5J01|1|A|A|27
5J01|1|A|G|28
*
5J01|1|A|C|40
5J01|1|A|G|41
5J01|1|A|A|42
5J01|1|A|A|43
*
5J01|1|A|U|65
5J01|1|A|U|66
5J01|1|A|A|67
5J01|1|A|G|68
*
5J01|1|A|C|119
5J01|1|A|A|120
5J01|1|A|A|121
5J01|1|A|A|122
5J01|1|A|C|123
*
5J01|1|A|G|243
5J01|1|A|G|244
5J01|1|A|A|245
5J01|1|A|A|246
5J01|1|A|A|247

Current chains

Chain A

group II intron lariat

Nearby chains