J5_5J01_002

3D structure

PDB id

5J01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+ and MG2+.

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

AGCAGAAG*CGGAAC*GAA*UGUG*CGAU

Length

25 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J01|1|A|A|287
5J01|1|A|G|288
5J01|1|A|C|289
5J01|1|A|A|290
5J01|1|A|G|291
5J01|1|A|A|292
5J01|1|A|A|293
5J01|1|A|G|294
*
5J01|1|A|C|323
5J01|1|A|G|324
5J01|1|A|G|325
5J01|1|A|A|326
5J01|1|A|A|327
5J01|1|A|C|328
*
5J01|1|A|G|354
5J01|1|A|A|355
5J01|1|A|A|356
*
5J01|1|A|U|387
5J01|1|A|G|388
5J01|1|A|U|389
5J01|1|A|G|390
*
5J01|1|A|C|416
5J01|1|A|G|417
5J01|1|A|A|418
5J01|1|A|U|419

Current chains

Chain A

group II intron lariat

Nearby chains