J5_5J30_001

3D structure

PDB id

5J30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5J30_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0623

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5J30|1|QA|C|36
5J30|1|QA|U|37
5J30|1|QA|G|38
5J30|1|QA|G|39
*
5J30|1|QA|C|403
5J30|1|QA|U|404
5J30|1|QA|U|405
5J30|1|QA|G|406
*
5J30|1|QA|C|436
5J30|1|QA|U|437
5J30|1|QA|G|438
5J30|1|QA|A|439
5J30|1|QA|A|441
5J30|1|QA|C|442
*
5J30|1|QA|G|492
5J30|1|QA|G|493
5J30|1|QA|U|494
5J30|1|QA|A|495
5J30|1|QA|A|496
5J30|1|QA|U|498
5J30|1|QA|A|499
5J30|1|QA|G|500
*
5J30|1|QA|C|545
5J30|1|QA|G|546
5J30|1|QA|A|547
5J30|1|QA|G|548

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QD

30S ribosomal protein S4

Chain QL

30S ribosomal protein S12

Chain YI

50S ribosomal protein L9