J5_5J3C_001

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5J3C_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0625

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5J3C|1|QA|C|36
5J3C|1|QA|U|37
5J3C|1|QA|G|38
5J3C|1|QA|G|39
*
5J3C|1|QA|C|403
5J3C|1|QA|U|404
5J3C|1|QA|U|405
5J3C|1|QA|G|406
*
5J3C|1|QA|C|436
5J3C|1|QA|U|437
5J3C|1|QA|G|438
5J3C|1|QA|A|439
5J3C|1|QA|A|441
5J3C|1|QA|C|442
*
5J3C|1|QA|G|492
5J3C|1|QA|G|493
5J3C|1|QA|U|494
5J3C|1|QA|A|495
5J3C|1|QA|A|496
5J3C|1|QA|U|498
5J3C|1|QA|A|499
5J3C|1|QA|G|500
*
5J3C|1|QA|C|545
5J3C|1|QA|G|546
5J3C|1|QA|A|547
5J3C|1|QA|G|548

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QD

30S ribosomal protein S4

Chain QL

30S ribosomal protein S12

Chain YI

50S ribosomal protein L9