J5_5J4B_004
3D structure
- PDB id
- 5J4B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 5J4B|1|1A|U|1301
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5J4B_004 not in the Motif Atlas
- Homologous match to J5_9DFE_004
- Geometric discrepancy: 0.0591
- The information below is about J5_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5J4B|1|1A|C|607
5J4B|1|1A|G|608
5J4B|1|1A|A|609
5J4B|1|1A|C|610
5J4B|1|1A|U|611
5J4B|1|1A|C|612
*
5J4B|1|1A|G|715
5J4B|1|1A|G|716
5J4B|1|1A|A|717
5J4B|1|1A|C|718
*
5J4B|1|1A|G|856
5J4B|1|1A|U|857
5J4B|1|1A|U|858
5J4B|1|1A|C|859
*
5J4B|1|1A|G|1240
5J4B|1|1A|C|1241
*
5J4B|1|1A|G|1296
5J4B|1|1A|C|1297
5J4B|1|1A|G|1298
5J4B|1|1A|A|1299
5J4B|1|1A|A|1300
5J4B|1|1A|U|1301
5J4B|1|1A|G|1302
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 18
- 50S ribosomal protein L35
- Chain 1F
- 50S ribosomal protein L4
- Chain 1P
- 50S ribosomal protein L15
- Chain 1U
- 50S ribosomal protein L20
- Chain 1V
- 50S ribosomal protein L21
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