J5_5J4C_010

3D structure

PDB id

5J4C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

5J4C|1|2A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5J4C_010 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0618

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5J4C|1|2A|C|47
5J4C|1|2A|G|48
5J4C|1|2A|A|49
5J4C|1|2A|U|50
5J4C|1|2A|G|51
5J4C|1|2A|A|52
5J4C|1|2A|A|53
5J4C|1|2A|G|54
*
5J4C|1|2A|C|116
5J4C|1|2A|G|117
5J4C|1|2A|A|118
5J4C|1|2A|A|119
5J4C|1|2A|U|120
5J4C|1|2A|G|121
*
5J4C|1|2A|C|130
5J4C|1|2A|G|131
*
5J4C|1|2A|C|148
5J4C|1|2A|A|149
5J4C|1|2A|C|150
*
5J4C|1|2A|G|176
5J4C|1|2A|G|177
5J4C|1|2A|G|178

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23