J5_5J4D_003
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAUGAAG*CGAAUG*CG*CAC*GGG
- Length
- 22 nucleotides
- Bulged bases
- 5J4D|1|B|U|50
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5J4D_003 not in the Motif Atlas
- Homologous match to J5_9DFE_001
- Geometric discrepancy: 0.0699
- The information below is about J5_9DFE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
5J4D|1|B|C|47
5J4D|1|B|G|48
5J4D|1|B|A|49
5J4D|1|B|U|50
5J4D|1|B|G|51
5J4D|1|B|A|52
5J4D|1|B|A|53
5J4D|1|B|G|54
*
5J4D|1|B|C|116
5J4D|1|B|G|117
5J4D|1|B|A|118
5J4D|1|B|A|119
5J4D|1|B|U|120
5J4D|1|B|G|121
*
5J4D|1|B|C|130
5J4D|1|B|G|131
*
5J4D|1|B|C|148
5J4D|1|B|A|149
5J4D|1|B|C|150
*
5J4D|1|B|G|176
5J4D|1|B|G|177
5J4D|1|B|G|178
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain EA
- 50S ribosomal protein L34
- Chain U
- 50S ribosomal protein L23
Coloring options: