J5_5J7L_015

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

5J7L|1|DA|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

5J7L|1|DA|C|584
5J7L|1|DA|G|585
5J7L|1|DA|A|586
5J7L|1|DA|C|587
5J7L|1|DA|U|588
5J7L|1|DA|U|589
*
5J7L|1|DA|A|668
5J7L|1|DA|G|669
5J7L|1|DA|A|670
5J7L|1|DA|C|671
*
5J7L|1|DA|G|809
5J7L|1|DA|U|810
5J7L|1|DA|U|811
5J7L|1|DA|C|812
*
5J7L|1|DA|G|1195
5J7L|1|DA|C|1196
*
5J7L|1|DA|G|1250
5J7L|1|DA|C|1251
5J7L|1|DA|G|1252
5J7L|1|DA|A|1253
5J7L|1|DA|A|1254
5J7L|1|DA|U|1255
5J7L|1|DA|G|1256

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D4

50S ribosomal protein L35

Chain DE

50S ribosomal protein L4

Chain DM

50S ribosomal protein L15

Chain DR

50S ribosomal protein L20

Chain DS

50S ribosomal protein L21