Motif J5_74302.5 Version J5_74302.5 of this group appears in releases 3.91 to 3.96
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 14 | break | 15 | 16 | break | 17 | 18 | 19 | 20 | 21 | 22 | 1-22 | 2-21 | 3-10 | 3-11 | 3-18 | 4-12 | 5-9 | 6-7 | 10-11 | 14-15 | 16-17 | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_7A0S_004 | 7A0S | 0.0854 | 1 | X | LSU rRNA | C | 593 | G | 594 | A | 595 | C | 596 | U | 597 | U | 598 | * | A | 681 | G | 682 | A | 683 | C | 684 | * | G | 822 | U | 823 | U | 824 | C | 825 | * | G | 1209 | C | 1210 | * | G | 1263 | C | 1264 | G | 1265 | G | 1266 | A | 1267 | G | 1269 | cWW | tSH | tSs | tHW | cHS | tWS | cWW | cWW | cWW | cWW | |
| 2 | J5_9DFE_004 | 9DFE | 0.0773 | 1 | 1A | LSU rRNA | C | 584 | G | 585 | A | 586 | C | 587 | U | 588 | C | 589 | * | G | 668 | G | 669 | A | 670 | C | 671 | * | G | 809 | U | 810 | U | 811 | C | 812 | * | G | 1195 | C | 1196 | * | G | 1250 | C | 1251 | G | 1252 | A | 1253 | A | 1254 | G | 1256 | cWW | tSH | tSs | tHW | cHS | tWS | cWW | cWW | cWW | cWW | |
| 3 | J5_5J7L_015 | 5J7L | 0.0000 | 1 | DA | LSU rRNA | C | 584 | G | 585 | A | 586 | C | 587 | U | 588 | U | 589 | * | A | 668 | G | 669 | A | 670 | C | 671 | * | G | 809 | U | 810 | U | 811 | C | 812 | * | G | 1195 | C | 1196 | * | G | 1250 | C | 1251 | G | 1252 | A | 1253 | A | 1254 | G | 1256 | cWW | tSH | ncSs | tSs | tHW | cHS | tWS | cWW | cWW | cWW | cWW |
| 4 | J5_4WF9_004 | 4WF9 | 0.1071 | 1 | X | LSU rRNA | C | 627 | G | 628 | A | 629 | G | 630 | U | 631 | U | 632 | * | A | 713 | G | 714 | A | 715 | C | 716 | * | G | 854 | U | 855 | U | 856 | C | 857 | * | G | 1234 | C | 1235 | * | G | 1288 | A | 1289 | G | 1290 | A | 1291 | A | 1292 | G | 1294 | cWW | tSH | tSs | ncWS | tWS | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGACUU*AGAC*GUUC*GC*GCGGAUG | 1 |
| CGACUC*GGAC*GUUC*GC*GCGAAUG | 1 |
| CGACUU*AGAC*GUUC*GC*GCGAAUG | 1 |
| CGAGUU*AGAC*GUUC*GC*GAGAAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GACU*GA*UU**CGAAU | 2 |
| GACU*GA*UU**CGGAU | 1 |
| GAGU*GA*UU**AGAAU | 1 |
- Annotations
-
- (4)
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Heat map statistics
- Min 0.08 | Avg 0.08 | Max 0.13
Coloring options: