J5_5J88_010
3D structure
- PDB id
- 5J88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.32 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 5J88|1|CA|U|1758, 5J88|1|CA|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5J88_010 not in the Motif Atlas
- Homologous match to J5_5J7L_016
- Geometric discrepancy: 0.0701
- The information below is about J5_5J7L_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5J88|1|CA|G|1674
5J88|1|CA|C|1675
5J88|1|CA|A|1676
5J88|1|CA|A|1677
5J88|1|CA|A|1678
5J88|1|CA|A|1679
5J88|1|CA|U|1680
5J88|1|CA|G|1681
5J88|1|CA|G|1682
*
5J88|1|CA|C|1706
5J88|1|CA|G|1707
*
5J88|1|CA|U|1751
5J88|1|CA|C|1752
*
5J88|1|CA|G|1756
5J88|1|CA|A|1757
5J88|1|CA|U|1758
5J88|1|CA|A|1759
5J88|1|CA|C|1760
5J88|1|CA|C|1761
5J88|1|CA|A|1762
5J88|1|CA|G|1763
5J88|1|CA|C|1764
*
5J88|1|CA|G|1988
5J88|1|CA|G|1989
5J88|1|CA|C|1990
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain BA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CD
- 50S ribosomal protein L3
- Chain CL
- 50S ribosomal protein L14
- Chain CQ
- 50S ribosomal protein L19
Coloring options: