J5_5J8A_016
3D structure
- PDB id
- 5J8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 5J8A|1|DA|U|1758, 5J8A|1|DA|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5J8A_016 not in the Motif Atlas
- Homologous match to J5_5J7L_016
- Geometric discrepancy: 0.0219
- The information below is about J5_5J7L_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5J8A|1|DA|G|1674
5J8A|1|DA|C|1675
5J8A|1|DA|A|1676
5J8A|1|DA|A|1677
5J8A|1|DA|A|1678
5J8A|1|DA|A|1679
5J8A|1|DA|U|1680
5J8A|1|DA|G|1681
5J8A|1|DA|G|1682
*
5J8A|1|DA|C|1706
5J8A|1|DA|G|1707
*
5J8A|1|DA|U|1751
5J8A|1|DA|C|1752
*
5J8A|1|DA|G|1756
5J8A|1|DA|A|1757
5J8A|1|DA|U|1758
5J8A|1|DA|A|1759
5J8A|1|DA|C|1760
5J8A|1|DA|C|1761
5J8A|1|DA|A|1762
5J8A|1|DA|G|1763
5J8A|1|DA|C|1764
*
5J8A|1|DA|G|1988
5J8A|1|DA|G|1989
5J8A|1|DA|C|1990
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain DD
- 50S ribosomal protein L3
- Chain DL
- 50S ribosomal protein L14
- Chain DQ
- 50S ribosomal protein L19
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