J5_5J8B_002
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG
- Length
- 33 nucleotides
- Bulged bases
- 5J8B|1|A|U|287, 5J8B|1|A|U|431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5J8B|1|A|C|256
5J8B|1|A|U|257
5J8B|1|A|A|258
5J8B|1|A|A|259
5J8B|1|A|A|260
5J8B|1|A|C|261
*
5J8B|1|A|G|281
5J8B|1|A|G|282
5J8B|1|A|G|283
5J8B|1|A|U|284
5J8B|1|A|C|285
5J8B|1|A|G|286
5J8B|1|A|U|287
5J8B|1|A|G|288
*
5J8B|1|A|C|395
5J8B|1|A|G|396
5J8B|1|A|A|397
5J8B|1|A|G|398
5J8B|1|A|U|399
5J8B|1|A|A|400
5J8B|1|A|C|401
*
5J8B|1|A|G|425
5J8B|1|A|G|426
5J8B|1|A|A|427
5J8B|1|A|A|428
5J8B|1|A|U|429
5J8B|1|A|C|430
5J8B|1|A|U|431
5J8B|1|A|G|432
*
5J8B|1|A|U|447
5J8B|1|A|A|448
5J8B|1|A|A|449
5J8B|1|A|G|450
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L28
Coloring options: