J5_5J8B_005
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAG*CGUAG*CGAG*CGCAAG*CAAAG
- Length
- 24 nucleotides
- Bulged bases
- 5J8B|1|A|A|678
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5J8B|1|A|C|623
5J8B|1|A|G|624
5J8B|1|A|A|625
5J8B|1|A|G|626
*
5J8B|1|A|C|648
5J8B|1|A|G|649
5J8B|1|A|U|650
5J8B|1|A|A|651
5J8B|1|A|G|652
*
5J8B|1|A|C|659
5J8B|1|A|G|660
5J8B|1|A|A|661
5J8B|1|A|G|662
*
5J8B|1|A|C|674
5J8B|1|A|G|675
5J8B|1|A|C|676
5J8B|1|A|A|677
5J8B|1|A|A|678
5J8B|1|A|G|679
*
5J8B|1|A|C|698
5J8B|1|A|A|699
5J8B|1|A|A|700
5J8B|1|A|A|701
5J8B|1|A|G|702
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 8
- 50S ribosomal protein L35
- Chain F
- 50S ribosomal protein L4
- Chain P
- 50S ribosomal protein L15
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