J5_5J8B_007

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU

Length

37 nucleotides

Bulged bases

5J8B|1|A|A|2083, 5J8B|1|A|A|2459, 5J8B|1|A|U|2460, 5J8B|1|A|U|2517, 5J8B|1|A|U|2620

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J8B|1|A|A|2078
5J8B|1|A|A|2079
5J8B|1|A|A|2080
5J8B|1|A|A|2081
5J8B|1|A|G|2082
5J8B|1|A|A|2083
5J8B|1|A|C|2084
5J8B|1|A|C|2085
*
5J8B|1|A|G|2457
5J8B|1|A|G|2458
5J8B|1|A|A|2459
5J8B|1|A|U|2460
5J8B|1|A|A|2461
5J8B|1|A|A|2462
5J8B|1|A|C|2463
5J8B|1|A|A|2464
*
5J8B|1|A|U|2511
5J8B|1|A|C|2512
5J8B|1|A|G|2513
5J8B|1|A|A|2514
5J8B|1|A|U|2515
5J8B|1|A|G|2516
5J8B|1|A|U|2517
5J8B|1|A|C|2518
*
5J8B|1|A|G|2593
5J8B|1|A|G|2594
5J8B|1|A|U|2595
5J8B|1|A|U|2596
5J8B|1|A|C|2597
5J8B|1|A|A|2598
5J8B|1|A|G|2599
*
5J8B|1|A|C|2617
5J8B|1|A|G|2618
5J8B|1|A|G|2619
5J8B|1|A|U|2620
5J8B|1|A|C|2621
5J8B|1|A|U|2622

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L32

Chain D

50S ribosomal protein L2

Chain E

50S ribosomal protein L3

Chain F

50S ribosomal protein L4

Chain P

50S ribosomal protein L15

Chain Q

50S ribosomal protein L16

Chain x

Transfer RNA; tRNA

Chain z

GDPCP fused to the N-terminus of the ribosomal protein L9,Elongation factor 4