J5_5J91_008
3D structure
- PDB id
- 5J91 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Wild-type 70S E coli ribosome bound to Tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.96 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 5J91|1|CA|A|532, 5J91|1|CA|U|562
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5J91_008 not in the Motif Atlas
- Homologous match to J5_5J7L_014
- Geometric discrepancy: 0.0542
- The information below is about J5_5J7L_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5J91|1|CA|C|531
5J91|1|CA|A|532
5J91|1|CA|G|533
*
5J91|1|CA|C|560
5J91|1|CA|G|561
5J91|1|CA|U|562
5J91|1|CA|A|563
5J91|1|CA|C|564
*
5J91|1|CA|G|577
5J91|1|CA|G|578
5J91|1|CA|G|579
*
5J91|1|CA|C|1261
5J91|1|CA|A|1262
*
5J91|1|CA|U|2017
5J91|1|CA|G|2018
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain C1
- 50S ribosomal protein L32
- Chain CE
- 50S ribosomal protein L4
- Chain CK
- 50S ribosomal protein L13
- Chain CR
- 50S ribosomal protein L20
- Chain CS
- 50S ribosomal protein L21
- Chain CT
- 50S ribosomal protein L22
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