J5_5JB3_001

3D structure

PDB id

5JB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-REMOTE conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.34 Å

Loop

Sequence

CUAUGG*CAGUG*CUUUUC*GGAAUAAG*CGAG

Length

29 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JB3|1|2|C|30
5JB3|1|2|U|31
5JB3|1|2|A|32
5JB3|1|2|U|33
5JB3|1|2|G|34
5JB3|1|2|G|35
*
5JB3|1|2|C|398
5JB3|1|2|A|399
5JB3|1|2|G|400
5JB3|1|2|U|401
5JB3|1|2|G|402
*
5JB3|1|2|C|420
5JB3|1|2|U|421
5JB3|1|2|U|422
5JB3|1|2|U|423
5JB3|1|2|U|424
5JB3|1|2|C|425
*
5JB3|1|2|G|445
5JB3|1|2|G|446
5JB3|1|2|A|447
5JB3|1|2|A|448
5JB3|1|2|U|449
5JB3|1|2|A|450
5JB3|1|2|A|451
5JB3|1|2|G|452
*
5JB3|1|2|C|498
5JB3|1|2|G|499
5JB3|1|2|A|500
5JB3|1|2|G|501

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain N

30S ribosomal protein S12