J5_5JBH_001

3D structure

PDB id

5JBH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-IN conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.34 Å

Loop

Sequence

CUAUGG*CAGUG*CUUUUC*GGAAUAAG*CGAG

Length

29 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JBH|1|2|C|30
5JBH|1|2|U|31
5JBH|1|2|A|32
5JBH|1|2|U|33
5JBH|1|2|G|34
5JBH|1|2|G|35
*
5JBH|1|2|C|398
5JBH|1|2|A|399
5JBH|1|2|G|400
5JBH|1|2|U|401
5JBH|1|2|G|402
*
5JBH|1|2|C|420
5JBH|1|2|U|421
5JBH|1|2|U|422
5JBH|1|2|U|423
5JBH|1|2|U|424
5JBH|1|2|C|425
*
5JBH|1|2|G|445
5JBH|1|2|G|446
5JBH|1|2|A|447
5JBH|1|2|A|448
5JBH|1|2|U|449
5JBH|1|2|A|450
5JBH|1|2|A|451
5JBH|1|2|G|452
*
5JBH|1|2|C|498
5JBH|1|2|G|499
5JBH|1|2|A|500
5JBH|1|2|G|501

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein uS4

Chain N

30S ribosomal protein uS12