J5_5JUP_001
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG
- Length
- 35 nucleotides
- Bulged bases
- 5JUP|1|A|A|541, 5JUP|1|A|A|544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUP|1|A|C|31
5JUP|1|A|U|32
5JUP|1|A|U|33
5JUP|1|A|G|34
5JUP|1|A|U|35
*
5JUP|1|A|A|473
5JUP|1|A|A|474
5JUP|1|A|A|475
5JUP|1|A|U|476
5JUP|1|A|A|477
5JUP|1|A|A|478
5JUP|1|A|C|479
*
5JUP|1|A|G|509
5JUP|1|A|G|510
5JUP|1|A|A|511
5JUP|1|A|A|512
5JUP|1|A|U|513
5JUP|1|A|G|514
5JUP|1|A|A|515
5JUP|1|A|G|516
*
5JUP|1|A|C|536
5JUP|1|A|G|537
5JUP|1|A|A|538
5JUP|1|A|G|539
5JUP|1|A|G|540
5JUP|1|A|A|541
5JUP|1|A|A|542
5JUP|1|A|C|543
5JUP|1|A|A|544
5JUP|1|A|A|545
5JUP|1|A|U|546
*
5JUP|1|A|A|592
5JUP|1|A|U|593
5JUP|1|A|A|594
5JUP|1|A|G|595
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain BC
- eS30 (yeast S30)
- Chain GB
- uS4 (yeast S9)
- Chain UB
- uS12 (yeast S23)
- Chain VB
- eS24 (yeast S24)
Coloring options: