Loop J5_5JUP

3D structure

PDB id: 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
Description: Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å

Loop

Sequence: AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU
Length: 44 nucleotides
Bulged bases: 5JUP|1|A|U|128, 5JUP|1|A|U|132, 5JUP|1|A|U|134, 5JUP|1|A|A|135, 5JUP|1|A|A|140, 5JUP|1|A|U|141
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5JUP|1|A|A|124
5JUP|1|A|U|125
5JUP|1|A|A|126
5JUP|1|A|G|127
5JUP|1|A|U|128
5JUP|1|A|U|129
5JUP|1|A|C|130
5JUP|1|A|C|131
5JUP|1|A|U|132
5JUP|1|A|U|133
5JUP|1|A|U|134
5JUP|1|A|A|135
5JUP|1|A|C|136
5JUP|1|A|U|137
5JUP|1|A|A|138
5JUP|1|A|C|139
5JUP|1|A|A|140
5JUP|1|A|U|141
5JUP|1|A|G|142
5JUP|1|A|G|143
*
5JUP|1|A|C|172
5JUP|1|A|A|173
5JUP|1|A|U|174
5JUP|1|A|G|175
5JUP|1|A|C|176
5JUP|1|A|U|177
5JUP|1|A|U|178
5JUP|1|A|A|179
5JUP|1|A|A|180
5JUP|1|A|A|181
5JUP|1|A|A|182
*
5JUP|1|A|U|203
5JUP|1|A|G|204
*
5JUP|1|A|C|263
5JUP|1|A|G|264
5JUP|1|A|A|265
5JUP|1|A|A|266
5JUP|1|A|U|267
*
5JUP|1|A|A|288
5JUP|1|A|U|289
5JUP|1|A|G|290
5JUP|1|A|G|291
5JUP|1|A|U|292
5JUP|1|A|U|293

Current chains

Chain A: 18S ribosomal RNA

Nearby chains

Chain BB: eS4 (yeast S4)
Chain DB: eS6 (yeast S6)
Chain FB: eS8 (yeast S8)

J5_5JUP_004