J5_5JUP_005
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU
- Length
- 35 nucleotides
- Bulged bases
- 5JUP|1|A|U|694, 5JUP|1|A|C|696, 5JUP|1|A|C|697, 5JUP|1|A|U|813, 5JUP|1|A|G|815, 5JUP|1|A|A|856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUP|1|A|A|636
5JUP|1|A|C|637
5JUP|1|A|U|638
5JUP|1|A|U|639
5JUP|1|A|U|640
5JUP|1|A|G|641
*
5JUP|1|A|U|693
5JUP|1|A|U|694
5JUP|1|A|U|695
5JUP|1|A|C|696
5JUP|1|A|C|697
5JUP|1|A|U|698
*
5JUP|1|A|A|740
5JUP|1|A|C|741
5JUP|1|A|U|742
5JUP|1|A|U|743
5JUP|1|A|U|744
*
5JUP|1|A|A|807
5JUP|1|A|U|808
5JUP|1|A|A|809
5JUP|1|A|G|810
5JUP|1|A|A|811
5JUP|1|A|A|812
5JUP|1|A|U|813
5JUP|1|A|A|814
5JUP|1|A|G|815
5JUP|1|A|G|816
5JUP|1|A|A|817
*
5JUP|1|A|U|854
5JUP|1|A|A|855
5JUP|1|A|A|856
5JUP|1|A|U|857
5JUP|1|A|G|858
5JUP|1|A|A|859
5JUP|1|A|U|860
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain EB
- eS7 (yeast S7)
- Chain IB
- uS17 (yeast S11)
- Chain KB
- uS15 (yeast S13)
- Chain TB
- uS8 (yeast S22)
- Chain W
- eL19 (yeast L19)
Coloring options: