Loop J5_5JUS

3D structure

PDB id: 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
Description: Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å

Loop

Sequence: AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU
Length: 41 nucleotides
Bulged bases: 5JUS|1|A|U|128, 5JUS|1|A|U|132, 5JUS|1|A|U|133, 5JUS|1|A|U|134, 5JUS|1|A|A|135, 5JUS|1|A|A|140, 5JUS|1|A|U|141, 5JUS|1|A|U|178
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5JUS|1|A|A|124
5JUS|1|A|U|125
5JUS|1|A|A|126
5JUS|1|A|G|127
5JUS|1|A|U|128
5JUS|1|A|U|129
5JUS|1|A|C|130
5JUS|1|A|C|131
5JUS|1|A|U|132
5JUS|1|A|U|133
5JUS|1|A|U|134
5JUS|1|A|A|135
5JUS|1|A|C|136
5JUS|1|A|U|137
5JUS|1|A|A|138
5JUS|1|A|C|139
5JUS|1|A|A|140
5JUS|1|A|U|141
5JUS|1|A|G|142
5JUS|1|A|G|143
*
5JUS|1|A|C|172
5JUS|1|A|A|173
5JUS|1|A|U|174
5JUS|1|A|G|175
5JUS|1|A|C|176
5JUS|1|A|U|177
5JUS|1|A|U|178
5JUS|1|A|A|179
5JUS|1|A|A|180
5JUS|1|A|A|181
5JUS|1|A|A|182
*
5JUS|1|A|U|203
5JUS|1|A|G|204
*
5JUS|1|A|C|263
5JUS|1|A|G|264
5JUS|1|A|A|265
*
5JUS|1|A|U|289
5JUS|1|A|G|290
5JUS|1|A|G|291
5JUS|1|A|U|292
5JUS|1|A|U|293

Current chains

Chain A: 18S ribosomal RNA

Nearby chains

Chain BB: eS4 (yeast S4)
Chain DB: eS6 (yeast S6)
Chain FB: eS8 (yeast S8)

J5_5JUS_003