Loop J5_5JUT

3D structure

PDB id: 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
Description: Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4 Å

Loop

Sequence: ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGACGUUUGG*CCAUCGUAAUGAU
Length: 48 nucleotides
Bulged bases: 5JUT|1|A|U|638, 5JUT|1|A|U|694, 5JUT|1|A|C|696, 5JUT|1|A|C|697, 5JUT|1|A|U|813, 5JUT|1|A|G|815, 5JUT|1|A|U|820, 5JUT|1|A|U|821, 5JUT|1|A|G|823, 5JUT|1|A|U|851, 5JUT|1|A|C|852, 5JUT|1|A|A|856
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5JUT|1|A|A|636
5JUT|1|A|C|637
5JUT|1|A|U|638
5JUT|1|A|U|639
5JUT|1|A|U|640
5JUT|1|A|G|641
*
5JUT|1|A|U|693
5JUT|1|A|U|694
5JUT|1|A|U|695
5JUT|1|A|C|696
5JUT|1|A|C|697
5JUT|1|A|U|698
*
5JUT|1|A|A|740
5JUT|1|A|C|741
5JUT|1|A|U|742
5JUT|1|A|U|743
5JUT|1|A|U|744
*
5JUT|1|A|A|807
5JUT|1|A|U|808
5JUT|1|A|A|809
5JUT|1|A|G|810
5JUT|1|A|A|811
5JUT|1|A|A|812
5JUT|1|A|U|813
5JUT|1|A|A|814
5JUT|1|A|G|815
5JUT|1|A|G|816
5JUT|1|A|A|817
5JUT|1|A|C|818
5JUT|1|A|G|819
5JUT|1|A|U|820
5JUT|1|A|U|821
5JUT|1|A|U|822
5JUT|1|A|G|823
5JUT|1|A|G|824
*
5JUT|1|A|C|848
5JUT|1|A|C|849
5JUT|1|A|A|850
5JUT|1|A|U|851
5JUT|1|A|C|852
5JUT|1|A|G|853
5JUT|1|A|U|854
5JUT|1|A|A|855
5JUT|1|A|A|856
5JUT|1|A|U|857
5JUT|1|A|G|858
5JUT|1|A|A|859
5JUT|1|A|U|860

Current chains

Chain A: 18S ribosomal RNA

Nearby chains

Chain EB: eS7 (yeast S7)
Chain IB: uS17 (yeast S11)
Chain KB: uS15 (yeast S13)
Chain TB: uS8 (yeast S22)
Chain UB: uS12 (yeast S23)
Chain W: eL19 (yeast L19)

J5_5JUT_005