J5_5JUT_006
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 5JUT|1|B|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5JUT_006 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0978
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5JUT|1|B|G|658
5JUT|1|B|G|659
5JUT|1|B|A|660
5JUT|1|B|G|661
5JUT|1|B|U|662
5JUT|1|B|C|663
*
5JUT|1|B|G|799
5JUT|1|B|G|800
5JUT|1|B|A|801
5JUT|1|B|C|802
*
5JUT|1|B|G|941
5JUT|1|B|U|942
5JUT|1|B|U|943
5JUT|1|B|C|944
*
5JUT|1|B|G|1375
5JUT|1|B|C|1376
*
5JUT|1|B|G|1431
5JUT|1|B|C|1432
5JUT|1|B|A|1433
5JUT|1|B|G|1434
5JUT|1|B|A|1435
5JUT|1|B|U|1436
5JUT|1|B|C|1437
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain FA
- uL15 (yeast L28)
- Chain H
- uL4 (yeast L4)
- Chain JA
- eL32 (yeast L32)
- Chain Q
- eL13 (yeast L13)
- Chain S
- eL15 (yeast L15)
Coloring options: