J5_5JUT_008
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 5JUT|1|B|G|2116, 5JUT|1|B|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5JUT_008 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1502
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUT|1|B|G|1906
5JUT|1|B|C|1907
5JUT|1|B|A|1908
5JUT|1|B|A|1909
5JUT|1|B|A|1910
5JUT|1|B|A|1911
5JUT|1|B|U|1912
5JUT|1|B|A|1913
5JUT|1|B|G|1914
*
5JUT|1|B|U|1938
5JUT|1|B|G|1939
*
5JUT|1|B|U|2109
5JUT|1|B|G|2110
*
5JUT|1|B|C|2114
5JUT|1|B|G|2115
5JUT|1|B|G|2116
5JUT|1|B|A|2117
5JUT|1|B|C|2118
5JUT|1|B|A|2119
5JUT|1|B|A|2120
5JUT|1|B|G|2121
5JUT|1|B|G|2122
*
5JUT|1|B|C|2331
5JUT|1|B|A|2332
5JUT|1|B|C|2333
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain AA
- uL14 (yeast L23)
- Chain BA
- eL24 (yeast L24)
- Chain G
- uL3 (yeast L3)
- Chain W
- eL19 (yeast L19)
Coloring options: