J5_5JUT_009
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGU*GUUUAG*UAGUUU
- Length
- 38 nucleotides
- Bulged bases
- 5JUT|1|B|A|2404, 5JUT|1|B|A|2817, 5JUT|1|B|U|2818, 5JUT|1|B|G|2874, 5JUT|1|B|U|2954, 5JUT|1|B|U|2978, 5JUT|1|B|U|2979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUT|1|B|A|2399
5JUT|1|B|G|2400
5JUT|1|B|A|2401
5JUT|1|B|A|2402
5JUT|1|B|G|2403
5JUT|1|B|A|2404
5JUT|1|B|C|2405
5JUT|1|B|C|2406
*
5JUT|1|B|G|2815
5JUT|1|B|G|2816
5JUT|1|B|A|2817
5JUT|1|B|U|2818
5JUT|1|B|A|2819
5JUT|1|B|A|2820
5JUT|1|B|C|2821
5JUT|1|B|U|2822
5JUT|1|B|G|2823
*
5JUT|1|B|C|2867
5JUT|1|B|U|2868
5JUT|1|B|U|2869
5JUT|1|B|C|2870
5JUT|1|B|G|2871
5JUT|1|B|A|2872
5JUT|1|B|U|2873
5JUT|1|B|G|2874
5JUT|1|B|U|2875
*
5JUT|1|B|G|2952
5JUT|1|B|U|2953
5JUT|1|B|U|2954
5JUT|1|B|U|2955
5JUT|1|B|A|2956
5JUT|1|B|G|2957
*
5JUT|1|B|U|2975
5JUT|1|B|A|2976
5JUT|1|B|G|2977
5JUT|1|B|U|2978
5JUT|1|B|U|2979
5JUT|1|B|U|2980
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain F
- uL2 (yeast L2)
- Chain G
- uL3 (yeast L3)
- Chain GA
- eL29 (yeast L29)
- Chain H
- uL4 (yeast L4)
- Chain N
- uL16 (yeast L10)
Coloring options: