J5_5JUU_006

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGAGUC*GGAC*GUUC*GC*GCAGAUC

Length

23 nucleotides

Bulged bases

5JUU|1|B|U|1436

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5JUU_006 not in the Motif Atlas

Homologous match to J5_8C3A_002

Geometric discrepancy: 0.0782

The information below is about J5_8C3A_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUU|1|B|G|658
5JUU|1|B|G|659
5JUU|1|B|A|660
5JUU|1|B|G|661
5JUU|1|B|U|662
5JUU|1|B|C|663
*
5JUU|1|B|G|799
5JUU|1|B|G|800
5JUU|1|B|A|801
5JUU|1|B|C|802
*
5JUU|1|B|G|941
5JUU|1|B|U|942
5JUU|1|B|U|943
5JUU|1|B|C|944
*
5JUU|1|B|G|1375
5JUU|1|B|C|1376
*
5JUU|1|B|G|1431
5JUU|1|B|C|1432
5JUU|1|B|A|1433
5JUU|1|B|G|1434
5JUU|1|B|A|1435
5JUU|1|B|U|1436
5JUU|1|B|C|1437

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain FA

uL15 (yeast L28)

Chain H

uL4 (yeast L4)

Chain JA

eL32 (yeast L32)

Chain Q

eL13 (yeast L13)

Chain S

eL15 (yeast L15)