3D structure

PDB id
8C3A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of ailanthone bound to the Candida albicans 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GGAGUC*GGAC*GUUC*GC*GCAGAUC
Length
23 nucleotides
Bulged bases
8C3A|1|1|U|1432
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8C3A_002 not in the Motif Atlas
Homologous match to J5_5TBW_002
Geometric discrepancy: 0.0484
The information below is about J5_5TBW_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_31071.1
Basepair signature
cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
1

Unit IDs

8C3A|1|1|G|656
8C3A|1|1|G|657
8C3A|1|1|A|658
8C3A|1|1|G|659
8C3A|1|1|U|660
8C3A|1|1|C|661
*
8C3A|1|1|G|795
8C3A|1|1|G|796
8C3A|1|1|A|797
8C3A|1|1|C|798
*
8C3A|1|1|G|937
8C3A|1|1|U|938
8C3A|1|1|U|939
8C3A|1|1|C|940
*
8C3A|1|1|G|1371
8C3A|1|1|C|1372
*
8C3A|1|1|G|1427
8C3A|1|1|C|1428
8C3A|1|1|A|1429
8C3A|1|1|G|1430
8C3A|1|1|A|1431
8C3A|1|1|U|1432
8C3A|1|1|C|1433

Current chains

Chain 1
25S

Nearby chains

Chain 4
5.8S ribosomal RNA; 5.8S rRNA
Chain AB
60S ribosomal protein L28
Chain AF
60S ribosomal protein L32
Chain l
60S ribosomal protein L4-B
Chain t
60S ribosomal protein L13
Chain v
60S ribosomal protein L15-A

Coloring options:


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