J5_5JUU_011
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 5JUU|1|B|G|2418, 5JUU|1|B|A|2799, 5JUU|1|B|G|2800, 5JUU|1|B|A|2801, 5JUU|1|B|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5JUU_011 not in the Motif Atlas
- Homologous match to J5_8C3A_006
- Geometric discrepancy: 0.1471
- The information below is about J5_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUU|1|B|U|2416
5JUU|1|B|U|2417
5JUU|1|B|G|2418
5JUU|1|B|A|2419
*
5JUU|1|B|U|2611
5JUU|1|B|U|2612
5JUU|1|B|U|2613
5JUU|1|B|G|2614
*
5JUU|1|B|C|2627
5JUU|1|B|A|2628
*
5JUU|1|B|U|2650
5JUU|1|B|G|2651
*
5JUU|1|B|C|2798
5JUU|1|B|A|2799
5JUU|1|B|G|2800
5JUU|1|B|A|2801
5JUU|1|B|A|2802
5JUU|1|B|A|2803
5JUU|1|B|A|2804
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain F
- uL2 (yeast L2)
- Chain FA
- uL15 (yeast L28)
- Chain GA
- eL29 (yeast L29)
- Chain S
- eL15 (yeast L15)
- Chain TA
- eL42 (yeast L42)
- Chain V
- eL18 (yeast L18)
- Chain Y
- eL21 (yeast L21)
Coloring options: